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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000149535 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 418aa MW: 46737.2 Da PI: 7.202 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl MDP0000149535 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3.1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l MDP0000149535 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.818 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.216 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-10 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ 120 TGLDGHDHHN HQDGNSHDQP ISKGQWERRL QTDIHMAKQA LCEALSIDKP NVISTTTXSH 180 DLHLQDLKPS INIGNYNIND NPSTSTRPHH TSTYASNTEN IAKLLENWMK NSPKVSAHQT 240 NSDQTNADQT NSFNNNNNND NDNKGGATAT TRGRSMSTSS EGAHSATTTP DQAFDSLFSF 300 NSSPSDVSQS MSVDENNANF IADQASCLFQ DESKPNLEGQ VPLSLLEKWL LDDAAPHAHE 360 DLINISLENG AGLKYGNIIX LASPRSIGKK LNSTDHEIRV IHEVNDNVRF STRVSRLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15735 | 0.0 | bud| leaf| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00395 | DAP | Transfer from AT3G47600 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM001670 | 0.0 | KM001670.1 Pyrus x bretschneideri transcription factor MYB31 (MYB31) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008374542.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-131 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | D9ZJ59 | 0.0 | D9ZJ59_MALDO; MYB domain class transcription factor | ||||
STRING | GLYMA04G33720.1 | 1e-141 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-100 | myb domain protein 94 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000149535 |